About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3217519_3218087_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3217519 - 3218087
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCTCTCTATTT
Flanking Amino Acid:
LMNGLIQGVKGLLSFLSAPL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.9
32.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
70.9
0.47
0.9
70.5
35.1
Minor 5ss
35.9
-1.6
3.3
46.4
48.9
Minor BPS
53.7
0.2
1.9
75.99
41.5

Associated Gene:

Gene:
MFSD14A
Ensembl Gene ID:
ENSAPLG00000014324
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014993
3211565 - 3223751
12187