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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3221346_3221469_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3221346 - 3221469
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCCTTTGAATC
Flanking Amino Acid:
LAWYGFGSESWMMWAAGAVA
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
85.2
29.3
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
55.5
0.15
1.4
63.75
36.2

Associated Gene:

Gene:
MFSD14A
Ensembl Gene ID:
ENSAPLG00000014324
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014993
3211565 - 3223751
12187