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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3222306_3223455_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3222306 - 3223455
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTTC
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GTGATGTTAACT
Flanking Amino Acid:
SVVTQYHLQQNSIIPGPPFL
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
66.2
40.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
47.4
-0.3
3
68
43
Minor BPS
53.6
0.19
2.1
72.9
43.9

Associated Gene:

Gene:
MFSD14A
Ensembl Gene ID:
ENSAPLG00000014324
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014993
3211565 - 3223751
12187