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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3228625_3229143_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3228625 - 3229143
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
SKQLLKTNENVITWLNKQLN
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77
34.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.5
0.87
0.7
86.6
26
Minor 5ss
42.8
-0.8
3
54.9
44.6
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
SASS6
Ensembl Gene ID:
ENSAPLG00000014738
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030519
3226703 - 3239078
12376
ENSAPLT00000015409
3225703 - 3239173
13471