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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3234644_3235750_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3234644 - 3235750
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTTCCCAATC
Flanking Amino Acid:
NLVISEEDFQSLKSQQGLLV
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
77.3
0.61
0.9
73.7
36
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
57.9
0.23
1.9
75.03
35.5

Associated Gene:

Gene:
SASS6
Ensembl Gene ID:
ENSAPLG00000014738
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015409
3225703 - 3239173
13471