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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3239075_3239458_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3239075 - 3239458
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTGGA
5'SS Class:
major
3'SS Sequence:
TCTTTATAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTTTATAACT
Flanking Amino Acid:
RFCGEHGQQEKENDRKRIPC
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
63.5
43.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
69.3
0.43
1
64.3
40.8
Minor 5ss
36.5
-1.5
3.4
50
46.2
Minor BPS
67.3
0.62
1.6
83.99
37.1

Associated Gene:

Gene:
TRMT13
Ensembl Gene ID:
ENSAPLG00000014924
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015569
3238955 - 3245890
6936