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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3239662_3240406_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3239662 - 3240406
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTGCTTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGGTAATAAAAT
Flanking Amino Acid:
KCNSREKPKPVYFVQDINAG
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
76.9
0.61
1
78.8
33.4
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
44.8
-0.3
2.1
64.5
45

Associated Gene:

Gene:
TRMT13
Ensembl Gene ID:
ENSAPLG00000014924
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015569
3238955 - 3245890
6936