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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3240648_3241077_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3240648 - 3241077
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTCA
5'SS Class:
major
3'SS Sequence:
CATTTGTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTATACTGAAAA
Flanking Amino Acid:
LIIKLKKATNGLELDLKEQI
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.4
35.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75.4
0.57
1
69.6
40.4
Minor 5ss
38.8
-1.3
2.9
44.7
44.3
Minor BPS
51.5
0.04
1.8
63.95
41.5

Associated Gene:

Gene:
TRMT13
Ensembl Gene ID:
ENSAPLG00000014924
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015569
3238955 - 3245890
6936