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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3242284_3242954_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3242284 - 3242954
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAGAG
5'SS Class:
major
3'SS Sequence:
TTCATTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTCATTTACA
Flanking Amino Acid:
LVERATTRFKVDGKHKKRDS
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.3
40
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.6
0.6
0.9
72.3
36.8
Minor 5ss
27.7
-2.6
3.6
37
47.6
Minor BPS
64.9
0.46
1.9
79.34
35.9

Associated Gene:

Gene:
TRMT13
Ensembl Gene ID:
ENSAPLG00000014924
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015569
3238955 - 3245890
6936