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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3242938_3246654_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3242938 - 3246654
Intron Length:
3717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GTAAATGAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTAAATGAAAT
Flanking Amino Acid:
LYIQESLKKTDSLNMASH*
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
48.7
-0
1.1
40.5
42.6
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
45.4
-0.2
2
67.03
42.1

Associated Gene:

Gene:
LRRC39
Ensembl Gene ID:
ENSAPLG00000014987
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015645
3242912 - 3252140
9229