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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3243028_3243920_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3243028 - 3243920
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTAAAAAG
Flanking Amino Acid:
LQVDIQHLCLNKVPSLEKKR
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.3
0.84
0.8
80.5
37
Minor 5ss
39.6
-1.2
3.3
57.8
40.6
Minor BPS
44.5
-0.5
2
53.73
41.2

Associated Gene:

Gene:
TRMT13
Ensembl Gene ID:
ENSAPLG00000014924
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015569
3238955 - 3245890
6936