Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3243996_3244874_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3243996 - 3244874

Intron Length:

879

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTATAT

U12 Branch Point Sequence:

GTTTCAGTATAT

Flanking Amino Acid:

IGKHLCGAATDLALRCLVES

Intron Amino Acid Position:

264

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.8

86.3

Major BPS

55.3

0.13

1.2

52.8

42.9

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

45.5

-0.5

2.9

66.2

44.9

Minor BPS

44.7

-0.3

2.4

71.45

44.7

Associated Gene:

Gene:

TRMT13

Ensembl Gene ID:

ENSAPLG00000014924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015569

3238955 - 3245890

6936