Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3248156_3248518_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3248156 - 3248518

Intron Length:

363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

CCTACTTTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTAAAT

U12 Branch Point Sequence:

TAAATCTTGACT

Flanking Amino Acid:

KLQELPDAIDRMENLHTLWL

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.1

1.11

0.7

89.8

22.5

Major BPS

69.8

0.49

1.1

75.5

35.2

Major PPT

71.9

0.49

67.5

37.7

Minor 5ss

-1.6

2.6

43.5

43.6

Minor BPS

67.5

0.63

1.3

77.37

38.7

Associated Gene:

Gene:

LRRC39

Ensembl Gene ID:

ENSAPLG00000014987

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018086

3246617 - 3252140

5524

ENSAPLT00000015645

3242912 - 3252140

9229