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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3257641_3258598_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3257641 - 3258598
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTAA
5'SS Class:
major
3'SS Sequence:
CTCTGATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTCTGATTT
Flanking Amino Acid:
VAIGALGKIQILPRFNGKGE
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
75.3
29.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.1
0.59
0.8
73.4
36.1
Minor 5ss
45
-0.5
2.6
57.6
47.1
Minor BPS
56.4
0.28
1.7
77.98
38.5

Associated Gene:

Gene:
DBT
Ensembl Gene ID:
ENSAPLG00000015138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015801
3257473 - 3264985
7513