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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3258671_3258850_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3258671 - 3258850
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
ATATCTCTAGCA
Flanking Amino Acid:
GTFTLSNIGTIGGTYAKPVI
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
52.2
0.06
1.9
67.63
38.4

Associated Gene:

Gene:
DBT
Ensembl Gene ID:
ENSAPLG00000015138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015801
3257473 - 3264985
7513