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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3264651_3264810_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3264651 - 3264810
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATCTTT
5'SS Class:
major
3'SS Sequence:
TGTCTGTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTCTTTATT
Flanking Amino Acid:
HQQRLFRTSAVSCGQIVQFK
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
73.4
38.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.9
0.49
1.1
75.1
38.8
Minor 5ss
50.1
0
2.8
70.5
42
Minor BPS
75.1
0.87
1.5
91.36
31.7

Associated Gene:

Gene:
DBT
Ensembl Gene ID:
ENSAPLG00000015138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015801
3257473 - 3264985
7513