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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3272245_3272784_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3272245 - 3272784
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTACATTTAATT
Flanking Amino Acid:
NFTFNCDIKKRGYYPQGGGE
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.6
0.46
1.1
66.4
43.3
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
65.4
0.56
1.4
79.41
36.4

Associated Gene:

Gene:
RTCA
Ensembl Gene ID:
ENSAPLG00000015430
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016118
3269285 - 3277062
7778