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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3272927_3274117_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3272927 - 3274117
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATTAATT
Flanking Amino Acid:
AFVAGALPIKLAKDMSAAAV
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.3
26.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.1
0.52
1
73.5
36.9
Minor 5ss
30.6
-2.2
3.3
40.3
40.1
Minor BPS
66.3
0.59
1.7
85
34.8

Associated Gene:

Gene:
RTCA
Ensembl Gene ID:
ENSAPLG00000015430
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016118
3269285 - 3277062
7778