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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3274243_3274365_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3274243 - 3274365
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGACAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTGCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTGTTCTTAATA
Flanking Amino Acid:
DQAFGTGSGIIIVAETSTGC
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
69.9
36.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
84.6
0.78
0.8
84.7
30.2
Minor 5ss
33.7
-1.9
3.2
43.9
43.6
Minor BPS
80.8
0.96
1
82.55
32.7

Associated Gene:

Gene:
RTCA
Ensembl Gene ID:
ENSAPLG00000015430
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016118
3269285 - 3277062
7778