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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3274425_3275025_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3274425 - 3275025
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AACTTCTTACAT
Flanking Amino Acid:
LLAGSSLGKRGKNSDKVGIE
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
74.1
0.54
0.9
74.5
35.7
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
53.7
0.19
1.7
68.25
42.5

Associated Gene:

Gene:
RTCA
Ensembl Gene ID:
ENSAPLG00000015430
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016118
3269285 - 3277062
7778