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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3275121_3275919_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3275121 - 3275919
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
CCCCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AGTTCTTTAATA
Flanking Amino Acid:
GAVDDSLQDQLIIFMALAKG
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.6
39.9
Major BPS
80
0.75
1
78.6
31
Major PPT
82
0.72
0.7
79.3
26.2
Minor 5ss
37
-1.5
3.5
51.2
39.7
Minor BPS
77.7
0.86
1
78.42
31.6

Associated Gene:

Gene:
RTCA
Ensembl Gene ID:
ENSAPLG00000015430
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016118
3269285 - 3277062
7778