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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3276025_3276382_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3276025 - 3276382
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
AATCCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATATTTCTAATC
Flanking Amino Acid:
AIHFAEQLTKAKFTVTKSEE
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
69.8
0.45
0.9
66.4
39.7
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
55.8
0.16
1.6
65.7
33.7

Associated Gene:

Gene:
RTCA
Ensembl Gene ID:
ENSAPLG00000015430
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016118
3269285 - 3277062
7778