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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3306722_3307367_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3306722 - 3307367
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTATTTCTAATT
Flanking Amino Acid:
QSQHIVLDVKVPPQNITVLV
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
63.4
0.5
1.6
80.83
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015518
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016164
3304765 - 3311764
7000