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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3307635_3308669_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3307635 - 3308669
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAGTC
5'SS Class:
major
3'SS Sequence:
TCTCTACTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTC
Flanking Amino Acid:
EKATVDIFIQAPPKNTTLSI
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
66.8
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
79.2
0.66
0.8
74
29.8
Minor 5ss
33.3
-1.9
3.7
50
46.5
Minor BPS
65.1
0.45
1.8
79.59
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015518
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016164
3304765 - 3311764
7000