About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3311005_3311700_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3311005 - 3311700
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TTCTCCCTATTG
Flanking Amino Acid:
VLIILYVLITVKAFEMEIIP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
41.1
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
74.6
0.55
0.8
69.5
29.5
Minor 5ss
39.7
-1.2
2.8
46.4
44.2
Minor BPS
52.1
-0
2
63.76
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015518
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016164
3304765 - 3311764
7000