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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_331326_331499_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
331326 - 331499
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTTTCTTTATAG
Flanking Amino Acid:
TGTPVKRVRKAIEKSETSSE
Intron Amino Acid Position:
1001

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
85.9
0.81
0.7
81.1
30.2
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
64
0.3
1.8
72.46
40.4

Associated Gene:

Gene:
ZNF644
Ensembl Gene ID:
ENSAPLG00000013510
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014075
319852 - 385480
65629
ENSAPLT00000043550
319852 - 352954
33103
ENSAPLT00000030372
330407 - 352954
22548
ENSAPLT00000020539
319852 - 352954
33103
ENSAPLT00000020171
319852 - 352954
33103
ENSAPLT00000045896
319852 - 385480
65629