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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_334532_335217_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
334532 - 335217
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71
29.7
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
93.1
0.97
0.7
92.3
26.6
Minor 5ss
36.6
-1.5
2.9
45.9
43.7
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
ZNF644
Ensembl Gene ID:
ENSAPLG00000013510
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042662
319852 - 335290
15439
ENSAPLT00000030372
330407 - 352954
22548
ENSAPLT00000020171
319852 - 352954
33103