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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3354204_3358272_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3354204 - 3358272
Intron Length:
4069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTCACTGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTGTTTAATG
Flanking Amino Acid:
SSTIPDSINSYAEIT*
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
35.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
72.2
0.5
0.9
69.8
36.5
Minor 5ss
43.4
-0.7
2.8
60.6
43.7
Minor BPS
67.9
0.42
1.8
74.65
38.4

Associated Gene:

Gene:
CDC14A
Ensembl Gene ID:
ENSAPLG00000015528
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031819
3354155 - 3406863
52709