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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3412256_3412897_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3412256 - 3412897
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAAAT
Flanking Amino Acid:
DLAFAFSVWQQFPEHIVGFV
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
72.7
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
EXTL2
Ensembl Gene ID:
ENSAPLG00000016747
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040133
3411531 - 3416216
4686