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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3412969_3414362_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3412969 - 3414362
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAGC
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
AGTTAAAAAATT
Flanking Amino Acid:
LQNFPELETKAVLMMDDDTL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69
42.1
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
86.7
0.82
0.6
84.9
22.8
Minor 5ss
39.8
-1.1
2.8
52.6
44.1
Minor BPS
41.8
-0.5
2.1
62.68
40.9

Associated Gene:

Gene:
EXTL2
Ensembl Gene ID:
ENSAPLG00000016747
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040133
3411531 - 3416216
4686