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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3422068_3422395_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3422068 - 3422395
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATTGATA
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CCCAGCATAACT
Flanking Amino Acid:
PGLSTMAVITCLGLISDSFH
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.1
66
39
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
42.1
-0.9
3.1
54
45.2
Minor BPS
46.1
-0.2
2.1
60.99
48.3

Associated Gene:

Gene:
SLC30A7
Ensembl Gene ID:
ENSAPLG00000015786
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036232
3422027 - 3441933
19907