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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3477329_3484449_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3477329 - 3484449
Intron Length:
7121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GAGACTTTAATA
Flanking Amino Acid:
SCERLGVDYLDLYLIHWPDA
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
88.9
0.88
0.6
88.5
21.1
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
61.6
0.36
1.3
61.95
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012274
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012787
3472863 - 3493893
21031