Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3493214_3493749_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3493214 - 3493749

Intron Length:

536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTATGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TAAATTTTAATG

Flanking Amino Acid:

AQICIRWSIQNGIVTIPKST

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

74.3

36.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.8

0.83

0.8

84.8

35.6

Minor 5ss

32.1

-2

3.1

41.4

44.9

Minor BPS

58.4

0.12

1.3

57.57

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012274

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012787

3472863 - 3493893

21031