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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3508853_3509705_F

Intron Information:

Intron Rank:
2740
Intron Class:
major
Intron Phase:
Intron Coordinates:
3508853 - 3509705
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGGG
5'SS Class:
major
3'SS Sequence:
CTCCTGTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTCTGTGCCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
57.2
42.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.8
0.63
0.8
75.4
33
Minor 5ss
24.9
-2.9
3.1
30.1
42.9
Minor BPS
40.4
-0.6
3.7
74.14
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001856
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001851
3508216 - 3521425
13210