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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_351974_352898_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
351974 - 352898
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TATGTTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCGCTCTTGACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
72.7
0.51
0.9
70.9
39.4
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
67.1
0.62
1.3
75.88
41.2

Associated Gene:

Gene:
ZNF644
Ensembl Gene ID:
ENSAPLG00000013510
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043550
319852 - 352954
33103
ENSAPLT00000020539
319852 - 352954
33103