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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3650051_3652886_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3650051 - 3652886
Intron Length:
2836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TCTTCTTTAACA
Flanking Amino Acid:
SRQLRQLLEKVQNMSQSIEV
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
83.7
0.76
0.8
80.5
30
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
85.8
1.12
0.9
86.93
31.8

Associated Gene:

Gene:
OLFM3
Ensembl Gene ID:
ENSAPLG00000012523
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013059
3634496 - 3692674
58179