About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3653034_3692605_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3653034 - 3692605
Intron Length:
39572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCCCTTTATTT
Flanking Amino Acid:
SLLAALHPAQTQISPKEGWQ
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.1
0.65
1
72.2
42.7
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
61.8
0.45
1.6
76.8
40.5

Associated Gene:

Gene:
OLFM3
Ensembl Gene ID:
ENSAPLG00000012523
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013059
3634496 - 3692674
58179