About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3887286_3887964_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3887286 - 3887964
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTCTATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCATGTGAATT
Flanking Amino Acid:
WFSEFKRGKLLSYLDVEGNS
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
65.3
39.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
88
0.85
0.8
80.5
36.8
Minor 5ss
35.6
-1.6
3.3
49.5
41.3
Minor BPS
47.3
-0.1
2.1
68.71
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012650
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013547
3886373 - 3899012
12640