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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3888034_3888841_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3888034 - 3888841
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTACCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATGTTCTAAATA
Flanking Amino Acid:
CIYPDKKSEGVRISSWPKEN
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.6
0.58
0.9
70
35.3
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
61
0.34
1.6
68.72
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012650
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013547
3886373 - 3899012
12640