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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3898361_3898445_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3898361 - 3898445
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TCTCCAGTAACA
Flanking Amino Acid:
EGLRGIPGPVGEQGLPGAPG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
75.2
0.57
0.9
67.2
39.8
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
50.4
0.01
2.3
70.02
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012650
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013547
3886373 - 3899012
12640