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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3906993_3907287_R

Intron Information:

Intron Rank:
134306
Intron Class:
major
Intron Phase:
Intron Coordinates:
3906993 - 3907287
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ATGATTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.3
0.5
0.9
66.8
39.8
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019541
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038486
3906935 - 3911441
4507