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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3907644_3908143_R

Intron Information:

Intron Rank:
134308
Intron Class:
major
Intron Phase:
Intron Coordinates:
3907644 - 3908143
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
ATGATTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GTTCACATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
71.8
39.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
76.3
0.59
0.9
69.5
41.1
Minor 5ss
34.8
-1.7
2.8
48.5
40.3
Minor BPS
49.3
0.03
1.8
71.88
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019541
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038486
3906935 - 3911441
4507