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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3954877_3955339_R

Intron Information:

Intron Rank:
136608
Intron Class:
major
Intron Phase:
Intron Coordinates:
3954877 - 3955339
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTTTCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.8
0.67
0.8
77.6
29.8
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
59.8
0.3
1.6
70.85
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020954
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039040
3951719 - 3956080
4362