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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4008136_4010773_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4008136 - 4010773
Intron Length:
2638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GAATTTGTAACT
Flanking Amino Acid:
LSAPTKQLYPGGDFPEDFSI
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.4
0.82
0.8
80.4
36.6
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
52.3
0.15
2
70.16
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026987
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039359
4003583 - 4015668
12086