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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4162844_4163954_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4162844 - 4163954
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTTTAGTTAACA
Flanking Amino Acid:
SQPLPSEKCKSSEELVKEEE
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.1
36.6
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
83.3
0.75
0.8
81.8
35.1
Minor 5ss
38.1
-1.3
3.1
49.4
46.8
Minor BPS
66.3
0.51
2.2
84.46
35.5

Associated Gene:

Gene:
RNPC3
Ensembl Gene ID:
ENSAPLG00000015605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016267
4160478 - 4175886
15409