About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4164036_4164723_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4164036 - 4164723
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTTTGTACT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
KIDSGIAPSHGLTFPINSCL
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.2
69.2
41.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.7
0.87
0.6
88.3
21.5
Minor 5ss
40.4
-1.1
2.4
45.7
42
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
RNPC3
Ensembl Gene ID:
ENSAPLG00000015605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016267
4160478 - 4175886
15409