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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4168112_4168906_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4168112 - 4168906
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TTGTTTTAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAAAC
Flanking Amino Acid:
LLSVPVCAPHSNMHPTLSPS
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76.5
0.6
1
74.1
39.5
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
65.8
0.48
1.5
74.65
36.2

Associated Gene:

Gene:
RNPC3
Ensembl Gene ID:
ENSAPLG00000015605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016267
4160478 - 4175886
15409