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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4169044_4169898_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4169044 - 4169898
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGTA
5'SS Class:
major
3'SS Sequence:
GTTCAAATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ACTTGTTTAATG
Flanking Amino Acid:
QIKSDREEKNDLCAATEEIN
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
67.9
37.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
71.4
0.48
1
62.7
41.9
Minor 5ss
32.8
-2
3.7
43.2
46.4
Minor BPS
57.2
0.09
1.8
60.82
42.1

Associated Gene:

Gene:
RNPC3
Ensembl Gene ID:
ENSAPLG00000015605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016267
4160478 - 4175886
15409