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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4170061_4170236_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4170061 - 4170236
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATAA
5'SS Class:
major
3'SS Sequence:
TGTCTTCTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
AATATTTAGACT
Flanking Amino Acid:
ELEKNRLSREEMEKFSVFKN
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.4
34
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
73.8
0.54
1
71.8
38.4
Minor 5ss
35.5
-1.6
3.3
47
48.4
Minor BPS
48.8
-0
1.7
65.97
38.8

Associated Gene:

Gene:
RNPC3
Ensembl Gene ID:
ENSAPLG00000015605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016267
4160478 - 4175886
15409