About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4170471_4170981_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4170471 - 4170981
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TAATTCTCAATT
Flanking Amino Acid:
VDFQSELERNMFDIRLMKEG
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.8
30.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76
0.58
0.9
67.4
39.7
Minor 5ss
35.4
-1.7
3.3
48
41.4
Minor BPS
65.8
0.57
1.5
78.19
38

Associated Gene:

Gene:
RNPC3
Ensembl Gene ID:
ENSAPLG00000015605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016267
4160478 - 4175886
15409